Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 57:c0a85e845050 draft

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Uploaded
author greg
date Thu, 09 Feb 2017 10:13:29 -0500
parents b8a14639ead1
children 0f52ca3dfa9c
comparison
equal deleted inserted replaced
56:b8a14639ead1 57:c0a85e845050
105 #end if 105 #end if
106 106
107 && echo $create_ortho_sequences 107 && echo $create_ortho_sequences
108 && echo $orthogroups_fasta_src_dir 108 && echo $orthogroups_fasta_src_dir
109 && echo $os.path.exists($orthogroups_fasta_src_dir) 109 && echo $os.path.exists($orthogroups_fasta_src_dir)
110 && echo len($os.listdir($orthogroups_fasta_src_dir)) > 0
111 && echo $create_corresponding_coding_sequences 110 && echo $create_corresponding_coding_sequences
112 && echo $orthogroups_fasta_dest_dir 111 && echo $orthogroups_fasta_dest_dir
113 && echo $single_copy_orthogroup 112 && echo $single_copy_orthogroup
114 && echo $single_copy_fasta_src_dir 113 && echo $single_copy_fasta_src_dir
115 && echo len($os.listdir($single_copy_fasta_src_dir)) > 0
116 114
117 #if $create_ortho_sequences and $os.path.exists($orthogroups_fasta_src_dir) and len($os.listdir($orthogroups_fasta_src_dir)) > 0: 115 #if $create_ortho_sequences and $os.path.exists($orthogroups_fasta_src_dir) and len($os.listdir($orthogroups_fasta_src_dir)) > 0:
118 #if $create_corresponding_coding_sequences: 116 #if $create_corresponding_coding_sequences:
119 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs 117 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs
120 #else: 118 #else: