Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 83:b2c402ec0f04 draft

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Uploaded
author greg
date Thu, 23 Feb 2017 09:16:55 -0500
parents 539acfede958
children 2b9ceaf853cf
comparison
equal deleted inserted replaced
82:539acfede958 83:b2c402ec0f04
125 #end if 125 #end if
126 126
127 #if $single_copy_orthogroup: 127 #if $single_copy_orthogroup:
128 #if $create_ortho_sequences: 128 #if $create_ortho_sequences:
129 && echo -e '<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' > $output_ptsco 129 && echo -e '<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' > $output_ptsco
130 #for $fname in sorted($os.listdir($orthogroups_fasta_src_dir)): 130 #for $fname in sorted($os.listdir($single_copy_fasta_src_dir)):
131 && echo -e '<li><a href="$fname">$fname</a></li>\n' >> $output_ptsco 131 && echo -e '<li><a href="$fname">$fname</a></li>\n' >> $output_ptsco
132 #end for 132 #end for
133 && echo -e '</ul>\n</body>\n</html>\n' >> $output_ptsco 133 && echo -e '</ul>\n</body>\n</html>\n' >> $output_ptsco
134 && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true 134 && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
135 #end if 135 #end if