Mercurial > repos > greg > gene_family_classifier
comparison gene_family_classifier.xml @ 41:ae992973fe7b draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 06 Feb 2017 10:31:30 -0500 |
| parents | 6cf0fff77dea |
| children | 7ba3c31095fb |
comparison
equal
deleted
inserted
replaced
| 40:6cf0fff77dea | 41:ae992973fe7b |
|---|---|
| 77 #end if | 77 #end if |
| 78 #end if | 78 #end if |
| 79 | 79 |
| 80 #if $create_ortho_sequences: | 80 #if $create_ortho_sequences: |
| 81 #if $create_corresponding_coding_sequences: | 81 #if $create_corresponding_coding_sequences: |
| 82 && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs | 82 && echo "#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgfcs |
| 83 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs | 83 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs |
| 84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs | 84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs |
| 85 #else: | 85 #else: |
| 86 && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf | 86 && echo "#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf |
| 87 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf | 87 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf |
| 88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf | 88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf |
| 89 #end if | 89 #end if |
| 90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true | 90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true |
| 91 #end if | 91 #end if |