Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 3:a54b3161504f draft

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Uploaded
author greg
date Tue, 20 Dec 2016 11:22:11 -0500
parents 5440f5f083bc
children 2ffac03c08fe
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2:5440f5f083bc 3:a54b3161504f
21 --super_orthogroups $options_type.super_orthogroups 21 --super_orthogroups $options_type.super_orthogroups
22 #if str($options_type.single_copy_cond) == 'taxa': 22 #if str($options_type.single_copy_cond) == 'taxa':
23 --single_copy_taxa $options_type.single_copy_cond.single_copy_taxa 23 --single_copy_taxa $options_type.single_copy_cond.single_copy_taxa
24 --taxa_present $options_type.single_copy_cond.taxa_present 24 --taxa_present $options_type.single_copy_cond.taxa_present
25 #end if 25 #end if
26 #if str($options_type.create_orthogroup_cond) == 'yes': 26 #if str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes':
27 --orthogroup_fasta 27 --orthogroup_fasta
28 --coding_sequences "$options_type.create_orthogroup_cond.coding_sequences" 28 --coding_sequences "$options_type.create_orthogroup_cond.coding_sequences"
29 #end if 29 #end if
30 #end if 30 #end if
31 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds" 31 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"