Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.py @ 106:a2a3593a42d4 draft

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Uploaded
author greg
date Mon, 27 Feb 2017 13:00:25 -0500
parents 8abf3c06e7e1
children bdb3929a4d09
comparison
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105:8abf3c06e7e1 106:a2a3593a42d4
82 sys.stderr.write(msg) 82 sys.stderr.write(msg)
83 sys.exit(1) 83 sys.exit(1)
84 84
85 85
86 def write_html_output(output, title, dir): 86 def write_html_output(output, title, dir):
87 fh = open(output, 'wb') 87 with open(output, 'wb') as fh:
88 fh.write('<html><head><title>%s</title></head><body><p/><ul>' % str(title)) 88 fh.write('<html><head><title>%s</title></head><body><p/><ul>\n' % title)
89 for fname in os.listdir(dir): 89 for fname in os.listdir(dir):
90 fh.write('<li><a href="%s">%s</a></li>' % (fname, fname)) 90 fh.write('<li><a href="%s">%s</a></li>\n' % (fname, fname))
91 fh.write('</ul></body></html>') 91 fh.write('</ul></body></html>\n')
92 fh.close()
93 92
94 93
95 # Define command response buffers. 94 # Define command response buffers.
96 tmp_out = tempfile.NamedTemporaryFile().name 95 tmp_out = tempfile.NamedTemporaryFile().name
97 tmp_stdout = open(tmp_out, 'wb') 96 tmp_stdout = open(tmp_out, 'wb')