Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 118:7c4293224338 draft

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author greg
date Thu, 16 Mar 2017 14:23:12 -0400
parents 66ed8be7cc9b
children 3e369d4887b5
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117:66ed8be7cc9b 118:7c4293224338
1 <tool id="plant_tribes_gene_family_classifier" name="Classify gene sequences" version="0.4.0"> 1 <tool id="plant_tribes_gene_family_classifier" name="GeneFamilyClassifier" version="0.4.0">
2 <description>into precomputed orthologous gene family clusters</description> 2 <description>classifies gene sequences into pre-computed orthologous plant gene family clusters</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.4">plant_tribes_gene_family_classifier</requirement> 4 <requirement type="package" version="0.4">plant_tribes_gene_family_classifier</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <!-- Anything other than zero is an error --> 7 <!-- Anything other than zero is an error -->
272 * **Minimum taxa required in single copy orthogroup** - Used with "Minimum single copy taxa required in orthogroup" configuration only. 272 * **Minimum taxa required in single copy orthogroup** - Used with "Minimum single copy taxa required in orthogroup" configuration only.
273 * **Corresponding coding sequences (CDS) fasta file** - Used only when selecting "Create orthogroup fasta files?". 273 * **Corresponding coding sequences (CDS) fasta file** - Used only when selecting "Create orthogroup fasta files?".
274 274
275 </help> 275 </help>
276 <citations> 276 <citations>
277 <citation type="bibtex"> 277 <citation type="bibtex">
278 @unpublished{None, 278 @misc{None,
279 author = {Eric Wafula}, 279 journal = {None},
280 title = {None}, 280 author = {1. Wafula EK},
281 year = {None}, 281 title = {Manuscript in preparation},
282 url = {https://github.com/dePamphilis/PlantTribes} 282 year = {None},
283 }</citation> 283 url = {https://github.com/dePamphilis/PlantTribes},}
284 <citation type="doi">10.1186/1471-2105-10-421</citation> 284 </citation>
285 <citation type="bibtex"> 285 <citation type="doi">10.1186/1471-2105-10-421</citation>
286 @unpublished{None, 286 <citation type="bibtex">
287 author = {None}, 287 @article{None,
288 title = {HMMER 3.1+ hmmscan search sequence(s) against a profile database}, 288 journal = {GitHub repository},
289 year = {2013}, 289 author = {13. None},
290 url = {http://hmmer.org/} 290 title = {HMMER 3.1+ hmmscan search sequence(s) against a profile database},
291 }</citation> 291 year = {2013},
292 url = {http://hmmer.org},}
293 </citation>
292 </citations> 294 </citations>
293 </tool> 295 </tool>