Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 42:7ba3c31095fb draft

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Uploaded
author greg
date Mon, 06 Feb 2017 11:05:33 -0500
parents ae992973fe7b
children 8d1dbff42659
comparison
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41:ae992973fe7b 42:7ba3c31095fb
78 #end if 78 #end if
79 79
80 #if $create_ortho_sequences: 80 #if $create_ortho_sequences:
81 #if $create_corresponding_coding_sequences: 81 #if $create_corresponding_coding_sequences:
82 && echo "#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgfcs 82 && echo "#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgfcs
83 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs 83 && echo -e "#Size"\t\t"File" >> $output_ptcgfcs
84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs 84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t"$9}' >> $output_ptcgfcs
85 #else: 85 #else:
86 && echo "#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf 86 && echo "#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf
87 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf 87 && echo -e "#Size"\t\t"File" >> $output_ptcgf
88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf 88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t"$9}' >> $output_ptcgf
89 #end if 89 #end if
90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true 90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true
91 #end if 91 #end if
92 92
93 ]]> 93 ]]>