Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.py @ 115:713719f9210a draft

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Uploaded
author greg
date Mon, 27 Feb 2017 15:02:39 -0500
parents 1f357ae51fc4
children 7789adec8707
comparison
equal deleted inserted replaced
114:1f357ae51fc4 115:713719f9210a
86 def write_html_output(output, title, dir): 86 def write_html_output(output, title, dir):
87 with open(output, 'w') as fh: 87 with open(output, 'w') as fh:
88 fh.write('<html><head><h3>%s</h3></head>\n' % title) 88 fh.write('<html><head><h3>%s</h3></head>\n' % title)
89 fh.write('<body><p/><table cellpadding="2">\n') 89 fh.write('<body><p/><table cellpadding="2">\n')
90 fh.write('<tr><th>Size</th><th>Name</th></tr>\n') 90 fh.write('<tr><th>Size</th><th>Name</th></tr>\n')
91 for fname in sorted(os.listdir(dir)): 91 for index, fname in enumerate(sorted(os.listdir(dir))):
92 if index % 2 == 0:
93 bgcolor = '#FFFFCC'
94 else:
95 bgcolor = '#FFFFFF'
92 try: 96 try:
93 size = str(os.path.getsize(os.path.join(dir, fname))) 97 size = str(os.path.getsize(os.path.join(dir, fname)))
94 except: 98 except:
95 size = 'unknown' 99 size = 'unknown'
96 link = '<a href="%s" type="text/plain">%s</a>\n' % (fname, fname) 100 link = '<a href="%s" type="text/plain">%s</a>\n' % (fname, fname)
97 fh.write('<tr><td>%s</td><td>%s</td></tr>\n' % (size, link)) 101 fh.write('<tr bgcolor="%s"><td>%s</td><td>%s</td></tr>\n' % (bgcolor, size, link))
98 fh.write('</table></body></html>\n') 102 fh.write('</table></body></html>\n')
99 103
100 104
101 # Define command response buffers. 105 # Define command response buffers.
102 tmp_out = tempfile.NamedTemporaryFile().name 106 tmp_out = tempfile.NamedTemporaryFile().name