Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 40:6cf0fff77dea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Mon, 06 Feb 2017 09:35:08 -0500
parents c4f809cd2f38
children ae992973fe7b
comparison
equal deleted inserted replaced
39:c4f809cd2f38 40:6cf0fff77dea
78 #end if 78 #end if
79 79
80 #if $create_ortho_sequences: 80 #if $create_ortho_sequences:
81 #if $create_corresponding_coding_sequences: 81 #if $create_corresponding_coding_sequences:
82 && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs 82 && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs
83 && echo '#Size File' > $output_ptcgfcs 83 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs
84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgfcs 84 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs
85 #else: 85 #else:
86 && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf 86 && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf
87 && echo '#Size File' > $output_ptcgf 87 && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf
88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgf 88 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf
89 #end if 89 #end if
90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true 90 && mv $orthogroups_fasta_src_dir/* $dest_dir || true
91 #end if 91 #end if
92 92
93 ]]> 93 ]]>