Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 46:6c3fa9907d9c draft

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Uploaded
author greg
date Tue, 07 Feb 2017 13:53:56 -0500
parents 916fb0014f89
children 4a6834056e1e
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45:916fb0014f89 46:6c3fa9907d9c
20 20
21 #if str($options_type.options_type_selector) == 'advanced': 21 #if str($options_type.options_type_selector) == 'advanced':
22 #set create_orthogroup_cond = $options_type.create_orthogroup_cond 22 #set create_orthogroup_cond = $options_type.create_orthogroup_cond
23 #set create_orthogroup = $create_orthogroup_cond.create_orthogroup 23 #set create_orthogroup = $create_orthogroup_cond.create_orthogroup
24 #set specify_single_copy_cond = $options_type.specify_single_copy_cond 24 #set specify_single_copy_cond = $options_type.specify_single_copy_cond
25 #set specify_single_copy = $specify_single_copy_cond.single_copy_cond 25 #set specify_single_copy = $specify_single_copy_cond.specify_single_copy
26 26
27 #if str($specify_single_copy) == 'yes': 27 #if str($specify_single_copy) == 'yes':
28 #set specify_single_copy = True 28 #set specify_single_copy = True
29 #set single_copy_fasta_src_dir = $os.path.join('geneFamilyClassification_dir', 'single_copy_fasta') 29 #set single_copy_fasta_src_dir = $os.path.join('geneFamilyClassification_dir', 'single_copy_fasta')
30 #set single_copy_fasta_dest_dir = $output_ptsco.extra_files_path 30 #set single_copy_fasta_dest_dir = $output_ptsco.extra_files_path