Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 14:595088cc480a draft

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Uploaded
author greg
date Wed, 04 Jan 2017 14:30:12 -0500
parents cddbb2f13c28
children 9d4ec1102803
comparison
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13:cddbb2f13c28 14:595088cc480a
41 --num_threads \${GALAXY_SLOTS:-4} 41 --num_threads \${GALAXY_SLOTS:-4}
42 #if str($save_hmmscan_log_cond.classifier) == 'hmmscan' or str($save_hmmscan_log_cond.classifier) == 'both': 42 #if str($save_hmmscan_log_cond.classifier) == 'hmmscan' or str($save_hmmscan_log_cond.classifier) == 'both':
43 #if str($save_hmmscan_log_cond.save_hmmscan_log) == 'yes': 43 #if str($save_hmmscan_log_cond.save_hmmscan_log) == 'yes':
44 && mv $src_dir/hmmscan.log $hmmscan_log 44 && mv $src_dir/hmmscan.log $hmmscan_log
45 #else: 45 #else:
46 # Eliminate the hmmscan.log file
47 && rm $src_dir/hmmscan.log 46 && rm $src_dir/hmmscan.log
48 #end if 47 #end if
49 #end if 48 #end if
50 #if create_ortho_sequences: 49 #if $create_ortho_sequences:
51 && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output 50 && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output
52 && mv $src_dir/* $dest_dir 51 && mv $src_dir/* $dest_dir
53 #end if 52 #end if
54 ]]> 53 ]]>
55 </command> 54 </command>