Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.py @ 103:55052911cac3 draft

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Uploaded
author greg
date Mon, 27 Feb 2017 11:11:48 -0500
parents cd23ab8b617f
children c21d3f7b11a4
comparison
equal deleted inserted replaced
102:5aaa248ffcb6 103:55052911cac3
147 else: 147 else:
148 out_file = args.output_ptortho 148 out_file = args.output_ptortho
149 orthogroups_fasta_dest_dir = args.output_ptortho_dir 149 orthogroups_fasta_dest_dir = args.output_ptortho_dir
150 title = 'Orthogroups' 150 title = 'Orthogroups'
151 orthogroups_fasta_src_dir = os.path.join(OUTPUT_DIR, 'orthogroups_fasta') 151 orthogroups_fasta_src_dir = os.path.join(OUTPUT_DIR, 'orthogroups_fasta')
152 move_directory_files(orthogroups_fasta_src_dir, orthogroups_fasta_src_dir) 152 move_directory_files(orthogroups_fasta_src_dir, orthogroups_fasta_dest_dir)
153 write_html_output(out_file, title, orthogroups_fasta_dest_dir) 153 write_html_output(out_file, title, orthogroups_fasta_dest_dir)
154 # Handle single copy orthogroup outputs. 154 # Handle single copy orthogroup outputs.
155 if args.output_ptsco is not None: 155 if args.output_ptsco is not None:
156 single_copy_fasta_src_dir = os.path.join(OUTPUT_DIR, 'single_copy_fasta') 156 single_copy_fasta_src_dir = os.path.join(OUTPUT_DIR, 'single_copy_fasta')
157 single_copy_fasta_dest_dir = args.output_ptsco_dir 157 single_copy_fasta_dest_dir = args.output_ptsco_dir