Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 49:539a92a13168 draft

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Uploaded
author greg
date Wed, 08 Feb 2017 11:12:12 -0500
parents 906d5277042c
children a3b7f34ad3f7
comparison
equal deleted inserted replaced
48:906d5277042c 49:539a92a13168
94 #if $create_corresponding_coding_sequences: 94 #if $create_corresponding_coding_sequences:
95 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs 95 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs
96 #else: 96 #else:
97 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf 97 && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf
98 #end if 98 #end if
99 #if len($os.listdir($orthogroups_fasta_src_dir)) > 0: 99 && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
100 && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
101 #end if
102 #end if 100 #end if
103 101
104 #if $single_copy_orthogroup: 102 #if $single_copy_orthogroup:
105 && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco 103 && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
106 #if len($os.listdir($single_copy_fasta_src_dir)) > 0: 104 #if len($os.listdir($single_copy_fasta_src_dir)) > 0: