Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 5:51a3b7680acb draft

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author greg
date Tue, 20 Dec 2016 13:59:13 -0500
parents 2ffac03c08fe
children c076568ac16a
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4:2ffac03c08fe 5:51a3b7680acb
12 </stdio> 12 </stdio>
13 <command> 13 <command>
14 <![CDATA[ 14 <![CDATA[
15 #if str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes': 15 #if str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes':
16 #set orthogroups_fasta_dir = $options_type.create_orthogroup_cond.coding_sequences.extra_files_path 16 #set orthogroups_fasta_dir = $options_type.create_orthogroup_cond.coding_sequences.extra_files_path
17 mkdir -p $orthogroups_fasta_dir 17 mkdir -p $orthogroups_fasta_dir &&
18 #end if 18 #end if
19 GeneFamilyClassifier 19 GeneFamilyClassifier
20 --proteins "$input" 20 --proteins "$input"
21 --scaffold "$scaffold" 21 --scaffold "$scaffold"
22 --method $method 22 --method $method