Mercurial > repos > greg > gene_family_classifier
comparison gene_family_classifier.xml @ 137:4fbae9f0cc6f draft
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| author | greg |
|---|---|
| date | Fri, 28 Apr 2017 14:34:00 -0400 |
| parents | 08d59ab0eacb |
| children | 27cae07d715e |
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| 136:e4a17900f1a5 | 137:4fbae9f0cc6f |
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| 277 * **Minimum single copy taxa** - minimum number of taxa with single copy genes in the orthogroup. | 277 * **Minimum single copy taxa** - minimum number of taxa with single copy genes in the orthogroup. |
| 278 * **Minimum taxa present** - minimum number of taxa present in the orthogroup. | 278 * **Minimum taxa present** - minimum number of taxa present in the orthogroup. |
| 279 | 279 |
| 280 * **Custom selection configuration** - select ‘Yes’ to enable selection of a single copy configuration file. Scaffold configuration templates (.singleCopy.config) of how to customize single/low-copy orthogroups selection can be found in the scaffold data installed into Galaxy via the PlantTribes Scaffolds Download Data Manager tool, and also available at the PlantTribes GitHub `repository`_. Single/low-copy settings shown in these templates are used as defaults if ‘No’ is selected. | 280 * **Custom selection configuration** - select ‘Yes’ to enable selection of a single copy configuration file. Scaffold configuration templates (.singleCopy.config) of how to customize single/low-copy orthogroups selection can be found in the scaffold data installed into Galaxy via the PlantTribes Scaffolds Download Data Manager tool, and also available at the PlantTribes GitHub `repository`_. Single/low-copy settings shown in these templates are used as defaults if ‘No’ is selected. |
| 281 | 281 |
| 282 * **Custom selection file** - select a single/low-copy customized configuration file from your history. | |
| 283 | |
| 284 * **Orthogroups fasta configuration** - select ‘Yes’ to create proteins orthogroups fasta files for the classified sequences. | |
| 285 | |
| 286 * **Orthogroups coding sequences** - select ‘Yes’ to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. Requires coding sequences fasta file corresponding to the proteins fasta file to be selected from your history. | |
| 287 | |
| 288 * **Coding sequences fasta file** - select coding sequences fasta file corresponding to the proteins fasta file from your history. | |
| 289 | |
| 282 .. _repository: https://github.com/dePamphilis/PlantTribes/tree/master/config | 290 .. _repository: https://github.com/dePamphilis/PlantTribes/tree/master/config |
| 283 | |
| 284 * **Custom selection file** - select a single/low-copy customized configuration file from your history. | |
| 285 | |
| 286 * **Orthogroups fasta configuration** - select ‘Yes’ to create proteins orthogroups fasta files for the classified sequences. | |
| 287 | |
| 288 * **Orthogroups coding sequences** - select ‘Yes’ to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. Requires coding sequences fasta file corresponding to the proteins fasta file to be selected from your history. | |
| 289 | |
| 290 * **Coding sequences fasta file** - select coding sequences fasta file corresponding to the proteins fasta file from your history. | |
| 291 | 291 |
| 292 </help> | 292 </help> |
| 293 <citations> | 293 <citations> |
| 294 <expand macro="citation1" /> | 294 <expand macro="citation1" /> |
| 295 <citation type="bibtex"> | 295 <citation type="bibtex"> |