Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 7:4415ee993192 draft

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author greg
date Tue, 20 Dec 2016 14:37:06 -0500
parents c076568ac16a
children d678d4c2e9e1
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6:c076568ac16a 7:4415ee993192
33 #end if 33 #end if
34 #end if 34 #end if
35 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds" 35 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
36 --num_threads \${GALAXY_SLOTS:-4} 36 --num_threads \${GALAXY_SLOTS:-4}
37 #if str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes': 37 #if str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes':
38 && mv "geneFamilyClassification_dir/orthogroups_fasta/*" $orthogroups_fasta_dir 38 && cp "./geneFamilyClassification_dir/orthogroups_fasta/*" $orthogroups_fasta_dir
39 #end if 39 #end if
40 ]]> 40 ]]>
41 </command> 41 </command>
42 <inputs> 42 <inputs>
43 <param name="input" format="fasta" type="data" label="Amino acids (proteins) sequences fasta file"/> 43 <param name="input" format="fasta" type="data" label="Amino acids (proteins) sequences fasta file"/>