Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 92:39bfdb4189aa draft

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Uploaded
author greg
date Thu, 23 Feb 2017 15:01:38 -0500
parents 2b311ddff0d4
children 333f817caecc
comparison
equal deleted inserted replaced
91:2b311ddff0d4 92:39bfdb4189aa
114 #if $create_corresponding_coding_sequences: 114 #if $create_corresponding_coding_sequences:
115 #set out_file = $output_ptorthocs 115 #set out_file = $output_ptorthocs
116 #else: 116 #else:
117 #set out_file = $output_ptortho 117 #set out_file = $output_ptortho
118 #end if 118 #end if
119 && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
119 && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $out_file 120 && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $out_file
120 ##for $fname in $os.listdir($orthogroups_fasta_src_dir): 121 #for $fname in $os.listdir($orthogroups_fasta_dest_dir):
121 ## && echo -e "<li><a href=\"$fname\">$fname</a></li>\n" >> $out_file 122 && echo -e "<li><a href=\"$fname\">$fname</a></li>\n" >> $out_file
122 ##end for 123 #end for
123 && echo -e "</ul>\n</body>\n</html>\n" >> $out_file 124 && echo -e "</ul>\n</body>\n</html>\n" >> $out_file
124 && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
125 #end if 125 #end if
126 126
127 #if $single_copy_orthogroup: 127 #if $single_copy_orthogroup:
128 #if $create_ortho_sequences: 128 #if $create_ortho_sequences:
129 && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $output_ptsco 129 && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $output_ptsco