Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.py @ 157:387802cb9170 draft

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author greg
date Wed, 04 Oct 2017 14:27:45 -0400
parents 36ed0037292a
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156:ece27a1eeb5d 157:387802cb9170
67 shutil.move(src_hmmscan_log, args.hmmscan_log) 67 shutil.move(src_hmmscan_log, args.hmmscan_log)
68 68
69 # Handle orthogroups outputs. 69 # Handle orthogroups outputs.
70 if create_ortho_sequences: 70 if create_ortho_sequences:
71 orthogroups_fasta_src_dir = os.path.join(OUTPUT_DIR, 'orthogroups_fasta') 71 orthogroups_fasta_src_dir = os.path.join(OUTPUT_DIR, 'orthogroups_fasta')
72 orthogroups_fasta_dest_dir = 'output_orthos_dir' 72 orthogroups_fasta_dest_dir = 'output_orthogroups_fasta_dir'
73 if not os.path.isdir(orthogroups_fasta_dest_dir): 73 if not os.path.isdir(orthogroups_fasta_dest_dir):
74 os.makedirs(orthogroups_fasta_dest_dir) 74 os.makedirs(orthogroups_fasta_dest_dir)
75 # Remove source direrctory so it won't break dataset collection handler. 75 # Remove source direrctory so it won't break dataset collection handler.
76 utils.move_directory_files(orthogroups_fasta_src_dir, orthogroups_fasta_dest_dir, remove_source_dir=True) 76 utils.move_directory_files(orthogroups_fasta_src_dir, orthogroups_fasta_dest_dir, remove_source_dir=True)
77 77