Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 32:364960a5ad2c draft

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Uploaded
author greg
date Wed, 01 Feb 2017 14:44:15 -0500
parents 80e9d6e098ec
children c1a3b77de0f0
comparison
equal deleted inserted replaced
31:80e9d6e098ec 32:364960a5ad2c
158 </inputs> 158 </inputs>
159 <outputs> 159 <outputs>
160 <data name="hmmscan_log" format="txt" label="Protein classification hmmscan.log on ${on_string}"> 160 <data name="hmmscan_log" format="txt" label="Protein classification hmmscan.log on ${on_string}">
161 <filter>save_hmmscan_log_cond['classifier'] in ['hmmscan', 'both'] and save_hmmscan_log_cond['save_hmmscan_log'] == 'yes'</filter> 161 <filter>save_hmmscan_log_cond['classifier'] in ['hmmscan', 'both'] and save_hmmscan_log_cond['save_hmmscan_log'] == 'yes'</filter>
162 </data> 162 </data>
163 <data name="output" format="txt" label="Gene family clusters on ${on_string}"> 163 <data name="output" format="pgfc" label="Gene family clusters on ${on_string}">
164 <filter>options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes'and options_type['create_orthogroup_cond']['create_corresponding_coding_sequences_cond']['create_corresponding_coding_sequences'] == 'no'</filter> 164 <filter>options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes'and options_type['create_orthogroup_cond']['create_corresponding_coding_sequences_cond']['create_corresponding_coding_sequences'] == 'no'</filter>
165 </data> 165 </data>
166 <data name="output" format="txt" label="Gene family clusters and corresponding coding sequences on ${on_string}"> 166 <data name="output" format="pgfccs" label="Gene family clusters and corresponding coding sequences on ${on_string}">
167 <filter>options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes' and options_type['create_orthogroup_cond']['create_corresponding_coding_sequences_cond']['create_corresponding_coding_sequences'] == 'yes'</filter> 167 <filter>options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes' and options_type['create_orthogroup_cond']['create_corresponding_coding_sequences_cond']['create_corresponding_coding_sequences'] == 'yes'</filter>
168 </data> 168 </data>
169 <collection name="orthos" type="list"> 169 <collection name="orthos" type="list">
170 <discover_datasets pattern="__name__" directory="geneFamilyClassification_dir" visible="false" ext="tabular" /> 170 <discover_datasets pattern="__name__" directory="geneFamilyClassification_dir" visible="false" ext="tabular" />
171 </collection> 171 </collection>