Mercurial > repos > greg > gene_family_aligner

changeset 5:b52d29988df8 draft

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Uploaded
author greg
date Fri, 07 Apr 2017 14:37:29 -0400
parents 3f75c91767f9
children badd2d0f1689
files gene_family_aligner.xml macros.xml
diffstat 2 files changed, 9 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_aligner.xml	Fri Apr 07 13:48:58 2017 -0400
+++ b/gene_family_aligner.xml	Fri Apr 07 14:37:29 2017 -0400
@@ -88,10 +88,10 @@
         </conditional>
     </inputs>
     <outputs>
-        <data name="output_ptortho" format="ptortho" label="Integrated gene family clusters on ${on_string}">
+        <data name="output_ptortho" format="ptortho" label="Aligned gene family sequences on ${on_string}">
             <filter>input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')</filter>
         </data>
-        <data name="output_ptorthocs" format="ptorthocs" label="Integrated gene family clusters and corresponding coding sequences on ${on_string}">
+        <data name="output_ptorthocs" format="ptorthocs" label="Aligned gene family sequences and corresponding coding sequences on ${on_string}">
             <filter>input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes'</filter>
         </data>
     </outputs>
--- a/macros.xml	Fri Apr 07 13:48:58 2017 -0400
+++ b/macros.xml	Fri Apr 07 14:37:29 2017 -0400
@@ -20,6 +20,11 @@
             <requirement type="package" version="0.8">plant_tribes_gene_family_integrator</requirement>
         </requirements>
     </xml>
+    <xml name="requirements_kaks_analysis">
+        <requirements>
+            <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
+        </requirements>
+    </xml>
     <xml name="stdio">
         <stdio>
             <exit_code range="1:"/>
@@ -29,7 +34,7 @@
         </stdio>
     </xml>
     <xml name="param_codon_alignments">
-        <param name="codon_alignments" type="select" display="radio" label="Construct orthogroup multiple codon alignments?">
+        <param name="codon_alignments" type="select" label="Construct orthogroup multiple codon alignments?">
             <option value="yes" selected="true">Yes</option>
             <option value="no">No</option>
         </param>
@@ -48,7 +53,7 @@
         </param>
     </xml>
     <xml name="param_orthogroup_fna">
-        <param name="orthogroup_fna" type="select" display="radio" label="Process corresponding gene family classification orthogroups CDS fasta files?">
+        <param name="orthogroup_fna" type="select" label="Process corresponding gene family classification orthogroups CDS fasta files?">
             <option value="yes" selected="true">Yes</option>
             <option value="no">No</option>
         </param>