# HG changeset patch
# User greg
# Date 1529671060 14400
# Node ID bb3a5d50da928c162d6ce0a5ac6c0aafbf9cd9ba
# Parent  71619c9e01d3b0220338dd2bf5699a846b3eb859
Uploaded

diff -r 71619c9e01d3 -r bb3a5d50da92 gene_family_aligner.xml
--- a/gene_family_aligner.xml	Wed Dec 13 14:09:03 2017 -0500
+++ b/gene_family_aligner.xml	Fri Jun 22 08:37:40 2018 -0400
@@ -15,6 +15,9 @@
     #set name = $i.name
     ln -s $filename $input_dir/$name &&
 #end for
+export TOOLS_DIR=\$(dirname `which GeneFamilyAligner`) &&
+export PASTA_TOOLS_RUNDIR=\$TOOLS_DIR &&
+export PASTA_TOOLS_DEVDIR=\$TOOLS_DIR &&
 GeneFamilyAligner
 --alignment_method $alignment_method
 #if str($alignment_method) == 'pasta':