# HG changeset patch
# User greg
# Date 1501602229 14400
# Node ID 0e7ad3fa851ee2eb9df74e37ec4436920c37ded6
# Parent  bfac5c2309ca205e1e9cfd4116fc3134f776c16d
Uploaded

diff -r bfac5c2309ca -r 0e7ad3fa851e gene_family_aligner.xml
--- a/gene_family_aligner.xml	Tue Aug 01 10:36:06 2017 -0400
+++ b/gene_family_aligner.xml	Tue Aug 01 11:43:49 2017 -0400
@@ -131,7 +131,7 @@
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes')) and (remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'no')</filter>
         </data>
         <collection name="dataset_collection" type="list" label="${tool.name} (dataset collection) on ${on_string}">
-            <discover_datasets pattern="__name__" directory="geneFamilyAlignments_dir/dataset_collection" format="fasta" />
+            <discover_datasets pattern="__name__" directory="dataset_collection" format="fasta" />
             <filter>output_dataset_collection_cond['output_dataset_collection'] == 'yes'</filter>
         </collection>
     </outputs>