Mercurial > repos > greg > gene_family_aligner

comparison gene_family_aligner.xml @ 13:d7e6201b8d81 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Mon, 10 Apr 2017 14:46:51 -0400
parents 19529df59e9d
children af8dad310c32
comparison
equal deleted inserted replaced
12:19529df59e9d 13:d7e6201b8d81
9 <![CDATA[ 9 <![CDATA[
10 #set input_format = $input_format_cond.input_format 10 #set input_format = $input_format_cond.input_format
11 #set alignment_method_cond = $input_format_cond.alignment_method_cond 11 #set alignment_method_cond = $input_format_cond.alignment_method_cond
12 #set alignment_method = $alignment_method_cond.alignment_method 12 #set alignment_method = $alignment_method_cond.alignment_method
13 #if str($input_format_cond.input_format) == 'ptortho': 13 #if str($input_format_cond.input_format) == 'ptortho':
14 #set output_codon_alignments == False 14 #set output_codon_alignments = False
15 #else if str($input_format_cond.input_format) == 'ptorthocs' and str($input_format_cond.codon_alignments ) == 'no': 15 #else if str($input_format_cond.input_format) == 'ptorthocs' and str($input_format_cond.codon_alignments ) == 'no':
16 #set output_codon_alignments == False 16 #set output_codon_alignments = False
17 #else: 17 #else:
18 #set output_codon_alignments == True 18 #set output_codon_alignments = True
19 #end if 19 #end if
20 20
21 python $__tool_directory__/gene_family_aligner.py 21 python $__tool_directory__/gene_family_aligner.py
22 --alignment_method $alignment_method 22 --alignment_method $alignment_method
23 #if str($alignment_method) == 'pasta': 23 #if str($alignment_method) == 'pasta':