Mercurial > repos > greg > gene_family_aligner

comparison macros.xml @ 5:b52d29988df8 draft

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Uploaded
author greg
date Fri, 07 Apr 2017 14:37:29 -0400
parents 4f1c3b8c9ab1
children badd2d0f1689
comparison
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4:3f75c91767f9 5:b52d29988df8
18 <xml name="requirements_gene_family_integrator"> 18 <xml name="requirements_gene_family_integrator">
19 <requirements> 19 <requirements>
20 <requirement type="package" version="0.8">plant_tribes_gene_family_integrator</requirement> 20 <requirement type="package" version="0.8">plant_tribes_gene_family_integrator</requirement>
21 </requirements> 21 </requirements>
22 </xml> 22 </xml>
23 <xml name="requirements_kaks_analysis">
24 <requirements>
25 <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
26 </requirements>
27 </xml>
23 <xml name="stdio"> 28 <xml name="stdio">
24 <stdio> 29 <stdio>
25 <exit_code range="1:"/> 30 <exit_code range="1:"/>
26 <exit_code range=":-1"/> 31 <exit_code range=":-1"/>
27 <regex match="Error:"/> 32 <regex match="Error:"/>
28 <regex match="Exception:"/> 33 <regex match="Exception:"/>
29 </stdio> 34 </stdio>
30 </xml> 35 </xml>
31 <xml name="param_codon_alignments"> 36 <xml name="param_codon_alignments">
32 <param name="codon_alignments" type="select" display="radio" label="Construct orthogroup multiple codon alignments?"> 37 <param name="codon_alignments" type="select" label="Construct orthogroup multiple codon alignments?">
33 <option value="yes" selected="true">Yes</option> 38 <option value="yes" selected="true">Yes</option>
34 <option value="no">No</option> 39 <option value="no">No</option>
35 </param> 40 </param>
36 </xml> 41 </xml>
37 <xml name="param_method"> 42 <xml name="param_method">
46 <option value="basic" selected="true">Basic</option> 51 <option value="basic" selected="true">Basic</option>
47 <option value="advanced">Advanced</option> 52 <option value="advanced">Advanced</option>
48 </param> 53 </param>
49 </xml> 54 </xml>
50 <xml name="param_orthogroup_fna"> 55 <xml name="param_orthogroup_fna">
51 <param name="orthogroup_fna" type="select" display="radio" label="Process corresponding gene family classification orthogroups CDS fasta files?"> 56 <param name="orthogroup_fna" type="select" label="Process corresponding gene family classification orthogroups CDS fasta files?">
52 <option value="yes" selected="true">Yes</option> 57 <option value="yes" selected="true">Yes</option>
53 <option value="no">No</option> 58 <option value="no">No</option>
54 </param> 59 </param>
55 </xml> 60 </xml>
56 <xml name="param_scaffold"> 61 <xml name="param_scaffold">