Mercurial > repos > greg > gene_family_aligner

comparison gene_family_aligner.xml @ 5:b52d29988df8 draft

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Uploaded
author greg
date Fri, 07 Apr 2017 14:37:29 -0400
parents 01c08c35d051
children badd2d0f1689
comparison
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4:3f75c91767f9 5:b52d29988df8
86 <expand macro="cond_remove_gappy_sequences" /> 86 <expand macro="cond_remove_gappy_sequences" />
87 </when> 87 </when>
88 </conditional> 88 </conditional>
89 </inputs> 89 </inputs>
90 <outputs> 90 <outputs>
91 <data name="output_ptortho" format="ptortho" label="Integrated gene family clusters on ${on_string}"> 91 <data name="output_ptortho" format="ptortho" label="Aligned gene family sequences on ${on_string}">
92 <filter>input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')</filter> 92 <filter>input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')</filter>
93 </data> 93 </data>
94 <data name="output_ptorthocs" format="ptorthocs" label="Integrated gene family clusters and corresponding coding sequences on ${on_string}"> 94 <data name="output_ptorthocs" format="ptorthocs" label="Aligned gene family sequences and corresponding coding sequences on ${on_string}">
95 <filter>input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes'</filter> 95 <filter>input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes'</filter>
96 </data> 96 </data>
97 </outputs> 97 </outputs>
98 <tests> 98 <tests>
99 <!-- Test framework does not currently support inputs whose associated files_path contains files to be analyzed. 99 <!-- Test framework does not currently support inputs whose associated files_path contains files to be analyzed.