Mercurial > repos > greg > gene_family_aligner

comparison gene_family_aligner.xml @ 24:6d34db10765c draft

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author greg
date Fri, 05 May 2017 09:31:23 -0400
parents 4bc180041705
children 4d6e5f90aab8
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23:4bc180041705 24:6d34db10765c
2 <description>aligns integrated orthologous gene family clusters</description> 2 <description>aligns integrated orthologous gene family clusters</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_gene_family_aligner" /> 6 <expand macro="requirements_gene_family_aligner" />
7 <expand macro="stdio" /> 7 <command detect_errors="exit_code">
8 <command>
9 <![CDATA[ 8 <![CDATA[
10 #set input_format = $input_format_cond.input_format 9 #set input_format = $input_format_cond.input_format
11 #set alignment_method_cond = $input_format_cond.alignment_method_cond 10 #set alignment_method_cond = $input_format_cond.alignment_method_cond
12 #set alignment_method = $alignment_method_cond.alignment_method 11 #set alignment_method = $alignment_method_cond.alignment_method
13 #if str($input_format_cond.input_format) == 'ptortho': 12 #if str($input_format_cond.input_format) == 'ptortho':