Mercurial > repos > greg > gene_family_aligner

comparison macros.xml @ 21:5b42773159d8 draft

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Uploaded
author greg
date Mon, 01 May 2017 11:07:40 -0400
parents f3b6ddb952eb
children 64c366ba7f64
comparison
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20:76f586562e8d 21:5b42773159d8
38 <regex match="Error:"/> 38 <regex match="Error:"/>
39 <regex match="Exception:"/> 39 <regex match="Exception:"/>
40 </stdio> 40 </stdio>
41 </xml> 41 </xml>
42 <xml name="param_codon_alignments"> 42 <xml name="param_codon_alignments">
43 <param name="codon_alignments" type="select" label="Construct orthogroup multiple codon alignments"> 43 <param name="codon_alignments" type="select" label="Codon alignments">
44 <option value="yes" selected="true">Yes</option> 44 <option value="yes" selected="true">Yes</option>
45 <option value="no">No</option> 45 <option value="no">No</option>
46 </param> 46 </param>
47 </xml> 47 </xml>
48 <xml name="param_method"> 48 <xml name="param_method">
82 <option value="mafft" selected="true">MAFFT</option> 82 <option value="mafft" selected="true">MAFFT</option>
83 <option value="pasta">PASTA</option> 83 <option value="pasta">PASTA</option>
84 </param> 84 </param>
85 <when value="mafft" /> 85 <when value="mafft" />
86 <when value="pasta"> 86 <when value="pasta">
87 <param name="pasta_iter_limit" type="integer" value="3" min="1" label="Maximum number of iterations that the PASTA algorithm will execute" /> 87 <param name="pasta_iter_limit" type="integer" value="3" min="1" label="PASTA iteration limit" />
88 </when> 88 </when>
89 </conditional> 89 </conditional>
90 </xml> 90 </xml>
91 <xml name="cond_remove_gappy_sequences"> 91 <xml name="cond_remove_gappy_sequences">
92 <conditional name="remove_gappy_sequences_cond"> 92 <conditional name="remove_gappy_sequences_cond">