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comparison fasta_extract.xml @ 8:b740d423ce07 draft

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Uploaded
author greg
date Sun, 10 Jan 2016 14:25:59 -0500
parents d077d91065ea
children 67171d711b34
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7:4f6eba6beef5 8:b740d423ce07
8 <![CDATA[ 8 <![CDATA[
9 mkdir -p output_dir && 9 mkdir -p output_dir &&
10 mkdir -p output_orphan_dir && 10 mkdir -p output_orphan_dir &&
11 python $__tool_directory__/fasta_extract.py 11 python $__tool_directory__/fasta_extract.py
12 #for $i in $inputs: 12 #for $i in $inputs:
13 --input "$i" "${i.hid}" 13 --input "$i" ${i.hid}
14 #end for 14 #end for
15 #if str($reference_genome_cond.reference_genome_source) == "cached": 15 #if str($reference_genome_cond.reference_genome_source) == "cached":
16 #set genome_file = "$reference_genome_cond.reference_genome.fields.path" 16 #set genome_file = "$reference_genome_cond.reference_genome.fields.path"
17 #else: 17 #else:
18 #set genome_file = "$reference_genome_cond.reference_genome" 18 #set genome_file = "$reference_genome_cond.reference_genome"