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comparison fasta_extract.xml @ 2:4dc6890db112 draft

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author greg
date Sun, 10 Jan 2016 13:52:44 -0500
parents bc3f2a5c7b53
children d077d91065ea
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1:3fb7f36c2c8a 2:4dc6890db112
10 python $__tool_directory__/fasta_extract.py 10 python $__tool_directory__/fasta_extract.py
11 #for $i in $inputs: 11 #for $i in $inputs:
12 --input "$i" "${i.hid}" 12 --input "$i" "${i.hid}"
13 #end for 13 #end for
14 #if str($reference_genome_cond.reference_genome_source) == "cached": 14 #if str($reference_genome_cond.reference_genome_source) == "cached":
15 #set genome_file = $reference_genome_cond.reference_genome.fields.path 15 #set genome_file = "$reference_genome_cond.reference_genome.fields.path"
16 #else: 16 #else:
17 #set genome_file = $reference_genome_cond.reference_genome 17 #set genome_file = "$reference_genome_cond.reference_genome"
18 #end if 18 #end if
19 --genome_file "$genome_file" 19 --genome_file $genome_file
20 --subtract_from_start $subtract_from_start 20 --subtract_from_start $subtract_from_start
21 --add_to_end $add_to_end 21 --add_to_end $add_to_end
22 --extend_existing $extend_existing 22 --extend_existing $extend_existing
23 --strand $strand 23 --strand $strand
24 ]]> 24 ]]>