Mercurial > repos > greg > fasta_extract

comparison fasta_extract.py @ 5:24769b1ca957 draft

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Uploaded
author greg
date Sun, 10 Jan 2016 14:15:26 -0500
parents 99c868b492bb
children 4f6eba6beef5
comparison
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4:99c868b492bb 5:24769b1ca957
20 if orphan: 20 if orphan:
21 attrs += '_orphan' 21 attrs += '_orphan'
22 format = 'gff' 22 format = 'gff'
23 else: 23 else:
24 format = 'fasta' 24 format = 'fasta'
25 return os.path.join('output_dir', 'fasta_extract-%s_on_data_%d.%s' % (attrs, hid, format)) 25 if orphan:
26 return os.path.join('output_orphan_dir', '%s_on_data_%d.%s' % (attrs, hid, format))
27 return os.path.join('output_dir', '%s_on_data_%d.%s' % (attrs, hid, format))
26 28
27 29
28 def stop_err(msg): 30 def stop_err(msg):
29 sys.stderr.write(msg) 31 sys.stderr.write(msg)
30 sys.exit(1) 32 sys.exit(1)