Mercurial > repos > greg > extract_genomic_dna

changeset 15:e70f5ca82b63 draft

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Uploaded
author greg
date Wed, 02 Mar 2016 16:30:29 -0500
parents 1a10864abc1f
children 030691e5cc86
files extract_genomic_dna.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/extract_genomic_dna.py	Wed Mar 02 09:13:24 2016 -0500
+++ b/extract_genomic_dna.py	Wed Mar 02 16:30:29 2016 -0500
@@ -160,7 +160,7 @@
         if input_is_gff:
             start, end = egdu.convert_bed_coords_to_gff([start, end])
         fields = [args.genome, str(chrom), str(start), str(end), strand]
-        field_delimiter = extract_genomic_dna_utils.get_description_field_delimiter(args.description_field_delimiter)
+        field_delimiter = egdu.get_description_field_delimiter(args.description_field_delimiter)
         meta_data = field_delimiter.join(fields)
         if name.strip():
             out.write(">%s %s\n" % (meta_data, name))