Mercurial > repos > greg > extract_genomic_dna

changeset 12:9886ad53474a draft

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Uploaded
author greg
date Tue, 19 Jan 2016 21:48:00 -0500
parents b9c52a655249
children fe88f4eeaddc
files extract_genomic_dna.xml
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/extract_genomic_dna.xml	Fri Jan 15 08:44:11 2016 -0500
+++ b/extract_genomic_dna.xml	Tue Jan 19 21:48:00 2016 -0500
@@ -12,7 +12,7 @@
             python $__tool_directory__/extract_genomic_dna.py
             --input "$input"
             --genome "$genome"
-            #if isinstance($datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__):
+            #if $input.is_of_type("gff"):
                 --input_format "gff"
                 --columns "1,4,5,7"
                 --interpret_features $interpret_features
@@ -62,13 +62,15 @@
         </conditional>
         <param name="output_format" type="select" label="Select output format">
             <option value="fasta" selected="True">fasta</option>
+            <option value="gff">gff</option>
             <option value="interval">interval</option>
         </param>
     </inputs>
     <outputs>
-        <data name="output" format="gff">
+        <data name="output" format="fasta">
             <change_format>
-                <when output_format="interval" format="interval" />
+                <when input="output_format" value="gff" format="gff" />
+                <when input="output_format" value="interval" format="interval" />
             </change_format>
         </data>
     </outputs>