Mercurial > repos > greg > extract_genomic_dna

changeset 4:6333e08869fc draft

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Uploaded
author greg
date Thu, 14 Jan 2016 09:40:51 -0500
parents c46db4f7c869
children ee00b3c68801
files extract_genomic_dna.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/extract_genomic_dna.py	Thu Jan 14 09:38:50 2016 -0500
+++ b/extract_genomic_dna.py	Thu Jan 14 09:40:51 2016 -0500
@@ -79,12 +79,12 @@
 
 input_is_gff = args.input_format == 'gff'
 interpret_features = input_is_gff and args.interpret_features == "yes"
-if len(args.cols.split(',')) == 5:
+if len(args.columns.split(',')) == 5:
     # Bed file.
-    chrom_col, start_col, end_col, strand_col, name_col = parse_cols_arg(args.cols)
+    chrom_col, start_col, end_col, strand_col, name_col = parse_cols_arg(args.columns)
 else:
     # Gff file.
-    chrom_col, start_col, end_col, strand_col = parse_cols_arg(args.cols)
+    chrom_col, start_col, end_col, strand_col = parse_cols_arg(args.columns)
     name_col = False
 
 if args.reference_genome_source == "history":