# HG changeset patch
# User greg
# Date 1452782330 18000
# Node ID c46db4f7c86995e012c48b17f038c1f42781d9fb
# Parent  cc1879e0b0aec942194da71aee76447f1846c91a
Uploaded

diff -r cc1879e0b0ae -r c46db4f7c869 extract_genomic_dna.py
--- a/extract_genomic_dna.py	Thu Jan 14 09:31:08 2016 -0500
+++ b/extract_genomic_dna.py	Thu Jan 14 09:38:50 2016 -0500
@@ -66,15 +66,15 @@
     sys.exit(1)
 
 parser = argparse.ArgumentParser()
-parser.add_option('--input_format', dest='input_format', help="Input dataset format")
-parser.add_option('--input', dest='input', help="Input dataset")
-parser.add_option('--genome', dest='genome', help="Input dataset genome build")
-parser.add_option('--interpret_features', dest='interpret_features', default=None, help="Interpret features if input format is gff")
-parser.add_option('--columns', dest='columns', help="Columns to use in input file")
-parser.add_option('--reference_genome_source', dest='reference_genome_source', help="Source of reference genome file")
-parser.add_option('--reference_genome', dest='reference_genome', help="Reference genome file")
-parser.add_option('--output_format', dest='output_format', help="Output format")
-parser.add_option('--output', dest='output', help="Output dataset")
+parser.add_argument('--input_format', dest='input_format', help="Input dataset format")
+parser.add_argument('--input', dest='input', help="Input dataset")
+parser.add_argument('--genome', dest='genome', help="Input dataset genome build")
+parser.add_argument('--interpret_features', dest='interpret_features', default=None, help="Interpret features if input format is gff")
+parser.add_argument('--columns', dest='columns', help="Columns to use in input file")
+parser.add_argument('--reference_genome_source', dest='reference_genome_source', help="Source of reference genome file")
+parser.add_argument('--reference_genome', dest='reference_genome', help="Reference genome file")
+parser.add_argument('--output_format', dest='output_format', help="Output format")
+parser.add_argument('--output', dest='output', help="Output dataset")
 args = parser.parse_args()
 
 input_is_gff = args.input_format == 'gff'