Mercurial > repos > greg > extract_genomic_dna

comparison extract_genomic_dna.xml @ 2:cc1879e0b0ae draft

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author greg
date Thu, 14 Jan 2016 09:31:08 -0500
parents 311febbd33d6
children 3d40351fc9ac
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1:311febbd33d6 2:cc1879e0b0ae
3 <requirements> 3 <requirements>
4 <requirement type="package" version="35x1">faToTwoBit</requirement> 4 <requirement type="package" version="35x1">faToTwoBit</requirement>
5 </requirements> 5 </requirements>
6 <command> 6 <command>
7 <![CDATA[ 7 <![CDATA[
8 #set input_format $input.ext 8 #set input_format = $input.ext
9 #set genome = $input.metadata.dbkey 9 #set genome = $input.metadata.dbkey
10 #set datatype = $input.datatype 10 #set datatype = $input.datatype
11 mkdir -p output_dir && 11 mkdir -p output_dir &&
12 python $__tool_directory__/extract_genomic_dna.py 12 python $__tool_directory__/extract_genomic_dna.py
13 --input_format $input_format 13 --input_format $input_format