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comparison extract_genomic_dna.xml @ 20:5e839bb29ba9 draft

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author greg
date Thu, 03 Mar 2016 14:59:51 -0500
parents b212210c1808
children 2b565382e469
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19:b212210c1808 20:5e839bb29ba9
202 when generating the FASTA header with fields genome, chrom, start, end, strand (name) delimited by the 202 when generating the FASTA header with fields genome, chrom, start, end, strand (name) delimited by the
203 selected character. For example, selecting an underscore will produce a FASTA header like this: 203 selected character. For example, selecting an underscore will produce a FASTA header like this:
204 204
205 >mm9_53_550_+ test_chromosome 205 >mm9_53_550_+ test_chromosome
206 206
207 while selecting a vertical bar will produce a description like this: 207 while selecting a vertical bar will produce a FASTA header like this:
208 208
209 >mm9|53|550|+ test_chromosome 209 >mm9|53|550|+ test_chromosome
210 210
211 If strand is not defined, the default value is "+". 211 If strand is not defined, the default value is "+".
212 212
243 243
244 </help> 244 </help>
245 <citations> 245 <citations>
246 <citation type="bibtex"> 246 <citation type="bibtex">
247 @unpublished{None, 247 @unpublished{None,
248 author = {Guru Ananda}, 248 author = {Guru Ananda, Greg Von Kuster},
249 title = {None}, 249 title = {None},
250 year = {None}, 250 year = {None},
251 eprint = {None}, 251 eprint = {None},
252 url = {http://www.bx.psu.edu/~anton/labSite/} 252 url = {http://www.bx.psu.edu/~anton/labSite/}
253 }</citation> 253 }</citation>