Mercurial > repos > greg > drmi
diff dmri.py @ 23:0c3113fdfae6 draft
Uploaded
author | greg |
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date | Sun, 05 Nov 2017 07:43:52 -0500 |
parents | 814082359f36 |
children | 88ff4adbfb2f |
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--- a/dmri.py Sun Nov 05 07:35:51 2017 -0500 +++ b/dmri.py Sun Nov 05 07:43:52 2017 -0500 @@ -20,11 +20,14 @@ input_dir = args.drmi_dataset if args.drmi_dataset == 'sherbrooke_3shell': fetch_sherbrooke_3shell() + fdwi = os.path.join(input_dir, 'HARDI193.nii.gz') + fbval = os.path.join(input_dir, 'HARDI193.bval') + fbvec = os.path.join(input_dir, 'HARDI193.bvec') elif args.drmi_dataset == 'stanford_hardi': fetch_stanford_hardi() -fdwi = os.path.join(input_dir, 'HARDI193.nii.gz') -fbval = os.path.join(input_dir, 'HARDI193.bval') -fbvec = os.path.join(input_dir, 'HARDI193.bvec') + fdwi = os.path.join(input_dir, 'HARDI150.nii.gz') + fbval = os.path.join(input_dir, 'HARDI150.bval') + fbvec = os.path.join(input_dir, 'HARDI150.bvec') # Load the dMRI datasets. img = nibabel.load(fdwi) data = img.get_data()