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comparison dmri.py @ 24:88ff4adbfb2f draft

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author greg
date Sun, 05 Nov 2017 08:34:54 -0500
parents 0c3113fdfae6
children 65a365c8ca55
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23:0c3113fdfae6 24:88ff4adbfb2f
16 16
17 args = parser.parse_args() 17 args = parser.parse_args()
18 18
19 # Get input data. 19 # Get input data.
20 input_dir = args.drmi_dataset 20 input_dir = args.drmi_dataset
21 if args.drmi_dataset == 'sherbrooke_3shell': 21 if input_dir == 'sherbrooke_3shell':
22 fetch_sherbrooke_3shell() 22 fetch_sherbrooke_3shell()
23 fdwi = os.path.join(input_dir, 'HARDI193.nii.gz') 23 fdwi = os.path.join(input_dir, 'HARDI193.nii.gz')
24 fbval = os.path.join(input_dir, 'HARDI193.bval') 24 fbval = os.path.join(input_dir, 'HARDI193.bval')
25 fbvec = os.path.join(input_dir, 'HARDI193.bvec') 25 fbvec = os.path.join(input_dir, 'HARDI193.bvec')
26 elif args.drmi_dataset == 'stanford_hardi': 26 elif input_dir == 'stanford_hardi':
27 fetch_stanford_hardi() 27 fetch_stanford_hardi()
28 fdwi = os.path.join(input_dir, 'HARDI150.nii.gz') 28 fdwi = os.path.join(input_dir, 'HARDI150.nii.gz')
29 fbval = os.path.join(input_dir, 'HARDI150.bval') 29 fbval = os.path.join(input_dir, 'HARDI150.bval')
30 fbvec = os.path.join(input_dir, 'HARDI150.bvec') 30 fbvec = os.path.join(input_dir, 'HARDI150.bvec')
31 # Load the dMRI datasets. 31 # Load the dMRI datasets.