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comparison dmri.py @ 36:501221517d3f draft

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author greg
date Thu, 30 Nov 2017 10:47:25 -0500
parents 013144510199
children d9c4ef2ee7c6
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35:013144510199 36:501221517d3f
48 fbval = os.path.join(input_dir, 'HARDI150.bval') 48 fbval = os.path.join(input_dir, 'HARDI150.bval')
49 fbvec = os.path.join(input_dir, 'HARDI150.bvec') 49 fbvec = os.path.join(input_dir, 'HARDI150.bvec')
50 else: 50 else:
51 # input_dir == 'stanford_t1 51 # input_dir == 'stanford_t1
52 fetch_stanford_t1() 52 fetch_stanford_t1()
53 fdwi = os.path.join(input_dir, 'HARDI93.nii.gz') 53 fdwi = os.path.join(input_dir, 't1.nii.gz')
54 fbval = os.path.join(input_dir, 'HARDI93.bval') 54 fbval = os.path.join(input_dir, 't1.bval')
55 fbvec = os.path.join(input_dir, 'HARDI93.bvec') 55 fbvec = os.path.join(input_dir, 't1.bvec')
56 img = nibabel.load(fdwi) 56 img = nibabel.load(fdwi)
57 57
58 data = img.get_data() 58 data = img.get_data()
59 # data is a 4D array where the first 3 dimensions are the i, j, 59 # data is a 4D array where the first 3 dimensions are the i, j,
60 # k voxel coordinates and the last dimension is the number of 60 # k voxel coordinates and the last dimension is the number of