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comparison dmri.py @ 7:2b6708bc9391 draft

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Uploaded
author greg
date Fri, 03 Nov 2017 13:30:34 -0400
parents 6fe81fec6cb9
children a0d57df923d2
comparison
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6:cad13b378d22 7:2b6708bc9391
28 28
29 input_dir = 'input_dir' 29 input_dir = 'input_dir'
30 # Get input data. 30 # Get input data.
31 fetch_sherbrooke_3shell() 31 fetch_sherbrooke_3shell()
32 # MNove inputs to working directory. 32 # MNove inputs to working directory.
33 move_directory_files('/home/greg/.dipy', input_dir) 33 source_dir = os.path.abspath(os.path.join('home', 'greg', '.dipy', 'sherbrooke_3shell'))
34 move_directory_files(source_dir, input_dir)
34 fdwi = os.path.join(input_dir, 'HARDI193.nii.gz') 35 fdwi = os.path.join(input_dir, 'HARDI193.nii.gz')
35 fbval = os.path.join(input_dir, 'HARDI193.bval') 36 fbval = os.path.join(input_dir, 'HARDI193.bval')
36 fbvec = os.path.join(input_dir, 'HARDI193.bvec') 37 fbvec = os.path.join(input_dir, 'HARDI193.bvec')
37 # Load the dMRI datasets. 38 # Load the dMRI datasets.
38 img = nibabel.load(fdwi) 39 img = nibabel.load(fdwi)