Mercurial > repos > greg > data_manager_vsnp_dnaprints

comparison data_manager/vsnp_dnaprints_fetcher.xml @ 1:d8beedeed2e4 draft default tip

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author greg
date Fri, 14 Feb 2020 16:18:12 +0000
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0:a4de5f995963 1:d8beedeed2e4
30 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP DNAprints files are available in GitHub 30 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP DNAprints files are available in GitHub
31 at https://github.com/USDA-VS/vSNP_reference_options. 31 at https://github.com/USDA-VS/vSNP_reference_options.
32 32
33 * **Mycobacterium bovis AF2122/97** 33 * **Mycobacterium bovis AF2122/97**
34 34
35 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/NC_002945v4.yml 35 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Mycobacterium_AF2122/NC_002945v4.yml
36 36
37 * **Brucella abortus bv. 1 str. 9-941** 37 * **Brucella abortus bv. 1 str. 9-941**
38 38
39 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_abortus1/NC_006932-NC_006933.yml 39 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_abortus1/NC_006932-NC_006933.yml
40 40
41 * **Brucella abortus strain BER** 41 * **Brucella abortus strain BER**
42 42
43 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_abortus3/NZ_CP007682-NZ_CP007683.yml 43 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_abortus3/NZ_CP007682-NZ_CP007683.yml
44 44
45 * **Brucella canis ATCC 23365** 45 * **Brucella canis ATCC 23365**
46 46
47 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_canis/NC_010103-NC_010104.yml 47 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_canis/NC_010103-NC_010104.yml
48 48
49 * **Brucella ceti TE10759-12** 49 * **Brucella ceti TE10759-12**
50 50
51 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_ceti2/NC_022905-NC_022906.yml 51 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_ceti2/NC_022905-NC_022906.yml
52 52
53 * **Brucella melitensis bv. 1 str. 16M** 53 * **Brucella melitensis bv. 1 str. 16M**
54 54
55 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv1/NC_003317-NC_003318.yml 55 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv1/NC_003317-NC_003318.yml
56 56
57 * **Brucella melitensis bv. 3 str. Ether** 57 * **Brucella melitensis bv. 3 str. Ether**
58 58
59 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv3/NZ_CP007760-NZ_CP007761.yml 59 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv3/NZ_CP007760-NZ_CP007761.yml
60 60
61 * **Brucella melitensis BwIM_SOM_36b** 61 * **Brucella melitensis BwIM_SOM_36b**
62 62
63 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv1b/NZ_CP018508-NZ_CP018509.yml 63 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv1b/NZ_CP018508-NZ_CP018509.yml
64 64
65 * **Brucella melitensis ATCC 23457** 65 * **Brucella melitensis ATCC 23457**
66 66
67 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv2/NC_012441-NC_012442.yml 67 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv2/NC_012441-NC_012442.yml
68 68
69 * **Brucella ovis ATCC 25840** 69 * **Brucella ovis ATCC 25840**
70 70
71 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_ovis/NC_009505-NC_009504.yml 71 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_ovis/NC_009505-NC_009504.yml
72 72
73 * **Brucella suis 1330** 73 * **Brucella suis 1330**
74 74
75 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis1/NC_017251-NC_017250.yml 75 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis1/NC_017251-NC_017250.yml
76 76
77 * **Mycobacterium tuberculosis H37Rv** 77 * **Mycobacterium tuberculosis H37Rv**
78 78
79 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_H37/NC_000962.yml 79 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Mycobacterium_H37/NC_000962.yml
80 80
81 * **Mycobacterium avium subsp. paratuberculosis strain Telford** 81 * **Mycobacterium avium subsp. paratuberculosis strain Telford**
82 82
83 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/para-CP033688/CP033688.yml 83 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/para-CP033688/CP033688.yml
84 84
85 * **Mycobacterium avium subsp. paratuberculosis K-10** 85 * **Mycobacterium avium subsp. paratuberculosis K-10**
86 86
87 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/para-NC002944/NC_002944.yml 87 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/para-NC002944/NC_002944.yml
88 88
89 * **Brucella suis ATCC 23445** 89 * **Brucella suis ATCC 23445**
90 90
91 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis2/NC_010169-NC_010167.yml 91 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis2/NC_010169-NC_010167.yml
92 92
93 * **Brucella suis bv. 3 str. 686** 93 * **Brucella suis bv. 3 str. 686**
94 94
95 * **DNAprints file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis3/NZ_CP007719-NZ_CP007718.yml 95 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis3/NZ_CP007719-NZ_CP007718.yml
96 96
97 ]]></help> 97 ]]></help>
98 <citations> 98 <citations>
99 </citations> 99 </citations>
100 </tool> 100 </tool>