Mercurial > repos > greg > data_manager_gtdbtk_database_installer

diff data_manager_conf.xml @ 0:3ab83cb7e2d2 draft

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author greg
date Tue, 15 Mar 2022 15:32:31 +0000
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children e4fe7259c4e9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Tue Mar 15 15:32:31 2022 +0000
@@ -0,0 +1,17 @@
+<data_managers>
+    <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer">
+        <data_table name="gtdbtk_database">
+            <output>
+                <column name="value"/>
+                <column name="name"/>
+                <column name="db_path" output_ref="out_file">
+                    <move type="directory" relativize_symlinks="True">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database/${value}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database/${value}/${db_path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>