Mercurial > repos > greg > data_manager_gtdbtk_database_installer

comparison data_manager_conf.xml @ 2:e4fe7259c4e9 draft default tip

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author greg
date Wed, 16 Mar 2022 12:53:21 +0000
parents 3ab83cb7e2d2
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1:7093598fa300 2:e4fe7259c4e9
2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer"> 2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer">
3 <data_table name="gtdbtk_database"> 3 <data_table name="gtdbtk_database">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="name"/>
7 <column name="db_path" output_ref="out_file"> 7 <column name="path" output_ref="out_file">
8 <move type="directory" relativize_symlinks="True"> 8 <move type="directory" relativize_symlinks="True">
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database/${value}</target> 9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database/${value}</target>
10 </move> 10 </move>
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database/${value}/${db_path}</value_translation> 11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database/${value}</value_translation>
12 <value_translation type="function">abspath</value_translation> 12 <value_translation type="function">abspath</value_translation>
13 </column> 13 </column>
14 </output> 14 </output>
15 </data_table> 15 </data_table>
16 </data_manager> 16 </data_manager>