# HG changeset patch
# User greg
# Date 1511967051 18000
# Node ID 606a712b6322e28c82f095dd0f279c15bf0f385f
# Parent  c55029873167546a3ddc457a71d2ed65941b0ff2
Uploaded

diff -r c55029873167 -r 606a712b6322 create_streamlines.py
--- a/create_streamlines.py	Wed Nov 29 09:50:42 2017 -0500
+++ b/create_streamlines.py	Wed Nov 29 09:50:51 2017 -0500
@@ -79,22 +79,17 @@
 dm_img = nib.Nifti1Image(dm.astype("int16"), hardi_img.affine)
 dm_img.to_filename("lr-superiorfrontal-dm.nii")
 shutil.move('lr-superiorfrontal-dm.nii', args.output_superiorfrontal_nifti)
-
 # Make a trackvis header so we can save streamlines
 voxel_size = labels_img.header.get_zooms()
 trackvis_header = nib.trackvis.empty_header()
 trackvis_header['voxel_size'] = voxel_size
 trackvis_header['dim'] = shape
 trackvis_header['voxel_order'] = "RAS"
-
 # Move streamlines to "trackvis space"
 trackvis_point_space = utils.affine_for_trackvis(voxel_size)
 lr_sf_trk = utils.move_streamlines(lr_superiorfrontal_track, trackvis_point_space, input_space=affine)
 lr_sf_trk = list(lr_sf_trk)
-
 # Save streamlines
 for_save = [(sl, None, None) for sl in lr_sf_trk]
 nib.trackvis.write("lr-superiorfrontal.trk", for_save, trackvis_header)
 shutil.move('lr-superiorfrontal.trk', args.output_trackvis_header)
-dm_trackvis = utils.density_map(lr_sf_trk, shape, affine=trackvis_point_space)
-assert np.all(dm == dm_trackvis)