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comparison create_streamlines.xml @ 11:7b98048e1904 draft

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author greg
date Thu, 30 Nov 2017 10:10:54 -0500
parents 95674a233981
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10:95674a233981 11:7b98048e1904
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.13.0">dipy</requirement> 4 <requirement type="package" version="0.13.0">dipy</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/create_streamlines.py' 7 python '$__tool_directory__/create_streamlines.py'
8 --input $input
9 --input_extra_files_path '$input.extra_files_path'
8 --output_trackvis_header '$output_trackvis_header' 10 --output_trackvis_header '$output_trackvis_header'
9 --output_superiorfrontal_nifti '$output_superiorfrontal_nifti' 11 --output_superiorfrontal_nifti '$output_superiorfrontal_nifti'
12 --output_superiorfrontal_nifti_files_path '$output_superiorfrontal_nifti.files_path'
10 &>/dev/null 13 &>/dev/null
11 ]]></command> 14 ]]></command>
12 <inputs> 15 <inputs>
13 <param name="drmi_dataset" type="select" label="dRMI dataset"> 16 <param name="input" type="data" format="nifti1" label="dRMI dataset and label map"/>
14 <option value="stanford_t1" selected="true">stanford_t1</option>
15 </param>
16 </inputs> 17 </inputs>
17 <outputs> 18 <outputs>
18 <data name="output_superiorfrontal_nifti" format="nifti1" label="${tool.name}: Superiorfrontal" /> 19 <data name="output_superiorfrontal_nifti" format="nifti1" label="${tool.name}: Superiorfrontal" />
19 <data name="output_trackvis_header" format="trackvis" label="${tool.name}: Superiorfrontal Track Visualization Header" /> 20 <data name="output_trackvis_header" format="trackvis" label="${tool.name}: Superiorfrontal Track Visualization Header" />
20 </outputs> 21 </outputs>