Mercurial > repos > greg > create_genome_tracks

comparison create_genome_tracks.R @ 2:64b7d66acd75 draft

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Uploaded
author greg
date Fri, 10 Nov 2017 13:48:01 -0500
parents 27d5a1d744fd
children 3bc9d3e88e7b
comparison
equal deleted inserted replaced
1:a0766c75ef2f 2:64b7d66acd75
5 option_list <- list( 5 option_list <- list(
6 make_option(c("-b", "--build"), action="store", dest="build", help="Genome build"), 6 make_option(c("-b", "--build"), action="store", dest="build", help="Genome build"),
7 make_option(c("-c", "--chrom_len_file"), action="store", dest="chrom_len_file", help="Chromosome length file"), 7 make_option(c("-c", "--chrom_len_file"), action="store", dest="chrom_len_file", help="Chromosome length file"),
8 make_option(c("-d", "--header"), action="store", dest="header", default=NULL, help="Track header"), 8 make_option(c("-d", "--header"), action="store", dest="header", default=NULL, help="Track header"),
9 make_option(c("-e", "--state_name"), action="store", dest="state_name", help="State name"), 9 make_option(c("-e", "--state_name"), action="store", dest="state_name", help="State name"),
10 make_option(c("-h", "--hub_id"), action="store", dest="hub_id", help="Not sure what this is"), 10 make_option(c("-f", "--hub_id"), action="store", dest="hub_id", help="Not sure what this is"),
11 make_option(c("-i", "--cell_info"), action="store", dest="cell_info", default=NULL, help="Not sure what this is"), 11 make_option(c("-i", "--cell_info"), action="store", dest="cell_info", default=NULL, help="Not sure what this is"),
12 make_option(c("-n", "--hub_name"), action="store", dest="hub_name", default=NULL, help="Not sure what this is"), 12 make_option(c("-n", "--hub_name"), action="store", dest="hub_name", default=NULL, help="Not sure what this is"),
13 make_option(c("-p", "--parameter_files"), action="store", dest="parameter_files", help="Comma-separated list of IDEAS parameter files"), 13 make_option(c("-p", "--parameter_files"), action="store", dest="parameter_files", help="Comma-separated list of IDEAS parameter files"),
14 make_option(c("-s", "--state_files"), action="store", dest="state_files", help="Comma-separated list of IDEAS state files"), 14 make_option(c("-s", "--state_files"), action="store", dest="state_files", help="Comma-separated list of IDEAS state files"),
15 make_option(c("-t", "--target_url"), action="store", dest="target_url", help="target url for tracks, not sure what it is used for"), 15 make_option(c("-t", "--target_url"), action="store", dest="target_url", help="target url for tracks, not sure what it is used for"),