# HG changeset patch
# User greg
# Date 1471367116 14400
# Node ID b477344d20f1e5c12d38ebd6598a96f42235e7e2
# Parent  d965e188feabf293119130b0e36927247e1fc6fc
Uploaded

diff -r d965e188feab -r b477344d20f1 bmsb.xml
--- a/bmsb.xml	Tue Aug 16 13:05:09 2016 -0400
+++ b/bmsb.xml	Tue Aug 16 13:05:16 2016 -0400
@@ -8,13 +8,28 @@
     <command>
         <![CDATA[
             Rscript $__tool_directory__/bmsb.R
+            #if str($output_r_logging_cond.output_r_logging) == "yes":
+                -s "true"
+                -m "$output_r_log"
+            #end if
             -o "$output"
         ]]>
     </command>
     <inputs>
         <param name="input" type="data" format="csv" label="Select temperature data" />
+        <conditional name="output_r_logging_cond">
+            <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
+                <option value="yes" selected="True">Yes</option>
+                <option value="no">No</option>
+            </param>
+            <when value="no"/>
+            <when value="yes"/>
+        </conditional>
     </inputs>
     <outputs>
+        <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
+            <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
+        </data>
         <data name="output" format="RData"/>
     </outputs>
     <help>