# HG changeset patch
# User greg
# Date 1471355545 14400
# Node ID 7b0c47f9436ae86cde24c46fac0bd497f4dd8671
# Parent  99a386ac1f5b38fff5720571de8e83e3f9ab9fc9
Uploaded

diff -r 99a386ac1f5b -r 7b0c47f9436a bmsb.xml
--- a/bmsb.xml	Tue Aug 16 09:52:16 2016 -0400
+++ b/bmsb.xml	Tue Aug 16 09:52:25 2016 -0400
@@ -1,25 +1,22 @@
 <?xml version="."?>
-<tool id="bmsb" name="BMSB" version="1.0.0">
-    <description></description>
+<tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0">
+    <description>model</description>
     <requirements>
          <requirement type="package" version="3.3.1">r-base</requirement>
+         <requirement type="package" version="1.3.0">r-optparse</requirement>
     </requirements>
     <command>
         <![CDATA[
-            #import json
             Rscript $__tool_directory__/bmsb.R
-            -o "$output"
             #if str($output_r_logging_cond.output_r_logging) == "yes":
                 -s "true"
                 -m "$output_r_log"
             #end if
-            #if str($output_r_logging_cond.output_r_logging) == "yes":
-                -e "true"
-                -x "$output_ex_report"
-            #end if
+            -o "$output"
         ]]>
     </command>
     <inputs>
+        <param name="input" type="data" format="csv" label="Select temperature data" />
         <conditional name="output_r_logging_cond">
             <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
                 <option value="yes" selected="True">Yes</option>
@@ -33,9 +30,6 @@
         <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
             <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
         </data>
-        <data name="output_ex_report" format="json" label="${tool.name} on ${on_string}: Experiment report">
-            <filter>output_experiment_report_cond['output_experiment_report'] == "yes"</filter>
-        </data>
         <data name="output" format="RData"/>
     </outputs>
     <help>