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comparison bmsb.xml @ 0:ff341ead2c11 draft

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author greg
date Mon, 01 Aug 2016 11:16:51 -0400
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children e6809bb0bcf8
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-1:000000000000 0:ff341ead2c11
1 <?xml version="."?>
2 <tool id="bmsb" name="BMSB" version="1.0.0">
3 <description></description>
4 <requirements>
5 <requirement type="package" version="1.0">bmsb</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 #import json
10 Rscript $__tool_directory__/bmsb.R
11 -o "$output"
12 #if str($output_r_logging_cond.output_r_logging) == "yes":
13 -s "true"
14 -m "$output_r_log"
15 #end if
16 #if str($output_r_logging_cond.output_r_logging) == "yes":
17 -e "true"
18 -x "$output_ex_report"
19 #end if
20 ]]>
21 </command>
22 <inputs>
23 <conditional name="output_r_logging_cond">
24 <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
25 <option value="yes" selected="True">Yes</option>
26 <option value="no">No</option>
27 </param>
28 <when value="no"/>
29 <when value="yes"/>
30 </conditional>
31 </inputs>
32 <outputs>
33 <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
34 <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
35 </data>
36 <data name="output_ex_report" format="json" label="${tool.name} on ${on_string}: Experiment report">
37 <filter>output_experiment_report_cond['output_experiment_report'] == "yes"</filter>
38 </data>
39 <data name="output" format="RData"/>
40 </outputs>
41 <help>
42 **What it does**
43
44 BMSB prototype tool.
45 </help>
46 <citations>
47 <citation></citation>
48 </citations>
49 </tool>