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comparison bmsb.xml @ 24:af90870ced72 draft

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Uploaded
author greg
date Fri, 19 Aug 2016 14:38:43 -0400
parents c0ab95d49981
children 22043dadfd2c
comparison
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23:c0ab95d49981 24:af90870ced72
1 <?xml version="."?> 1 <?xml version="."?>
2 <tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0"> 2 <tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0">
3 <description>model</description> 3 <description></description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.3.1">r-base</requirement> 5 <requirement type="package" version="3.3.1">r-base</requirement>
6 <requirement type="package" version="1.3.0">r-optparse</requirement> 6 <requirement type="package" version="1.3.0">r-optparse</requirement>
7 </requirements> 7 </requirements>
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 #import json
10 Rscript $__tool_directory__/bmsb.R 11 Rscript $__tool_directory__/bmsb.R
11 -i "$input" 12 -i "$input"
12 #if str($output_r_logging_cond.output_r_logging) == "yes":
13 -s "true"
14 -m "$output_r_log"
15 #end if
16 -o "$output" 13 -o "$output"
14 ###if str($output_r_logging_cond.output_r_logging) == "yes":
15 ## -s "true"
16 ## -m "$output_r_log"
17 ###end if
18 ###if str($output_r_logging_cond.output_r_logging) == "yes":
19 ## -e "true"
20 ## -x "$output_ex_report"
21 ###end if
17 ]]> 22 ]]>
18 </command> 23 </command>
19 <inputs> 24 <inputs>
20 <param name="input" type="data" format="csv" label="Select temperature data" /> 25 <param name="input" type="data" format="RData" label="RData input" />
26 <!--
21 <conditional name="output_r_logging_cond"> 27 <conditional name="output_r_logging_cond">
22 <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages."> 28 <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
23 <option value="yes" selected="True">Yes</option> 29 <option value="yes" selected="True">Yes</option>
24 <option value="no">No</option> 30 <option value="no">No</option>
25 </param> 31 </param>
26 <when value="no"/> 32 <when value="no"/>
27 <when value="yes"/> 33 <when value="yes"/>
28 </conditional> 34 </conditional>
35 -->
29 </inputs> 36 </inputs>
30 <outputs> 37 <outputs>
38 <!--
31 <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log"> 39 <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
32 <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter> 40 <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
33 </data> 41 </data>
42 <data name="output_ex_report" format="json" label="${tool.name} on ${on_string}: Experiment report">
43 <filter>output_experiment_report_cond['output_experiment_report'] == "yes"</filter>
44 </data>
45 -->
34 <data name="output" format="RData"/> 46 <data name="output" format="RData"/>
35 </outputs> 47 </outputs>
36 <help> 48 <help>
37 **What it does** 49 **What it does**
38 50